Thursday, 19 December 2013

smiles :)

Simplified Molecular Input Line

Entry Specifications


INTRODUCTION OF SMILES

  • SMILES is a specification for unambiguously describing the structure of chemical molecules using short ASCII strings.
  • SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.

LAW OF SMILE


1) SMILES Bonds  

SINGLE*                    -
DOUBLE                    =
TRIPLE                      #
AROMATIC*              :

2) SMILES Branches

  • Represented by enclosure in parentheses
  • Can be nested or stacked
  • Examples:    
               1) OCC(C)C is iso-Butanol
                    2) OC(C)(C)C is tert-Butanol

3) SMILES Conventions
  • Avoid two consecutive left parentheses if possible
  • Strive for the fewest number of possible branches
  • Tautomeric bonds are not designated; enter the appropriate form

SMILES notation by using ChemSketch. :)





SMILESNameSMILESName
CCETHANE[OH3+]HYDRONIUM ION
C#NHYDROGEN CYANIDE[235U]URANIUM-235
O=C=OCARBON DIOXIDE[2H]O[2H]DEUTREIUM OXIDE

Click the link below for
1. SMILECAS Database Files

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